Eclipse is a heavyweight (memory, slow response), actually for most scripting tasks in bioinformatics it is way oversized. Other IDEs like NetBeans will most likely be as good or even better. I am using Eclipse IDE solely for Java, where it really shines, by providing auto-comepletion (makes you a lazy programmer), auto correction (makes you even more lazy) on the fly documentation browsing, subversion integration, code generation for web-services, and another gazillion of features and plug-ins I haven't even found yet.
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